Hi,
I have a '66, and have been using a Pertronix for a couple of decades with no issues.
The injection pump does have an 'aneroid compensator' which is in place to address elevation issues (I assume). It is the short can shaped item on the top of the pump between the cold start assembly and the exiting fuel lines to the injectors.
Since Mercedes were designed to operate in Germany, which has some pretty high elevations, they should not suffer at the elevations you drive at. I do not know how to test the aneroid compensator, but it might be the source of your problem. If you see the issue at high revs, then you might be placing demands on the engine without compensation for the thinner atmosphere.