Hello Jeff,
I took 3 photos to show you my setup. From what I could see from your first photo the open hose connector should be used for the water line coming from your warm running device on top of the Fuel Injection pump on the other side of the engine. The metal water line in your picture is connected somewhere else but I can't see from your picture where it goes.
The connector with the red cap on it should have a pipe that goes to the top of your valve cover. It is a vapor line that is for oil vapors to be burned by the engine via the venturi.
See second photo.
The bottom connector should have a 90 degree water hose that connects to a hard "T" pipe where one side runs to the lower radiator hose connected to the block and the other runs to the firewall. See third photo.
You may have other questions.
Tony